Package: MaxPro
Type: Package
Title: Maximum Projection Designs
Version: 3.1-2
Date: 2015-01-27
Author: Shan Ba and V. Roshan Joseph
Maintainer: Shan Ba <shanbatr@gmail.com>
Depends: nloptr
Description: Generate a maximum projection (MaxPro) design, a MaxPro Latin hypercube design or improve an initial design based on the MaxPro criterion. Details of the MaxPro criterion can be found in: Joseph, V. R., Gul, E., and Ba, S. (2015) "Maximum Projection Designs for Computer Experiments", Biometrika.
License: LGPL-2.1
Packaged: 2015-01-27 15:30:54 UTC; ba.s
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-27 20:49:37
Package: OUwie
Version: 1.50
Date: 2016-6-11
Title: Analysis of Evolutionary Rates in an OU Framework
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: R (>= 3.2.0), ape, nloptr, lattice, grDevices
Imports: numDeriv, corpcor, phytools, paleotree, phangorn, stats, expm, corHMM, Rmpfr
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-06-13 17:26:22 UTC; jbeaulieu
Repository: CRAN
Date/Publication: 2016-06-18 18:45:59
Package: episplineDensity
Version: 0.0-1
Date: 2014-11-08
Title: Density Estimation with Soft Information by Exponential
Epi-splines
Author: Sam Buttrey, Johannes Royset, and Roger Wets, based on
the Matlab code of Royset and Wets
Maintainer: Sam Buttrey <buttrey@nps.edu>
Depends: nloptr, pracma
Description: Produce one-dimensional density estimates using
exponential epi-splines. The user may incorporate soft information, by
imposing constraints that (i) require unimodality; (ii) require that the
density be monotone non-increase or non-decreasing; (iii) put upper bounds
on first or second moments; (iv) bound the density's values at mesh points;
(v) require that the estimate be continuous or continuously differentiable;
and more.
License: GPL-2
Packaged: 2014-11-10 15:51:07 UTC; sebuttre
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 18:33:30
Package: corHMM
Version: 1.19
Date: 2016-6-6
Title: Analysis of Binary Character Evolution
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Jeffrey C. Oliver <jeffreycoliver@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: ape, nloptr, GenSA
Imports: expm, numDeriv, corpcor, phangorn, parallel
Description: Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-06-08 16:09:30 UTC; jeremybeaulieu
Repository: CRAN
Date/Publication: 2016-06-09 06:18:08
Package: CCpop
Type: Package
Title: One and two locus GWAS of binary phenotype with
case-control-population design
Version: 1.0
Date: 2014-03-18
Author: Shachar Kaufman
Maintainer: Shachar Kaufman <shachark@post.tau.ac.il>
Description: Tests of association between SNPs or pairs of SNPs and binary phenotypes, in case-control / case-population / case-control-population studies.
Depends: nloptr
License: GPL-2
Packaged: 2014-03-24 10:32:47 UTC; Shachar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-24 12:03:06
Package: hisse
Version: 1.7
Date: 2016-6-8
Title: Hidden State Speciation and Extinction
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: ape, deSolve, GenSA, subplex, nloptr
Suggests: testthat, diversitree, knitr
Imports: parallel, phytools, data.table, methods
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
License: GPL (>= 2)
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-06-13 17:27:00 UTC; jbeaulieu
Repository: CRAN
Date/Publication: 2016-06-14 08:29:49
Package: stpm
Type: Package
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Version: 1.3.1
Date: 2016-05-24
Author: I. Y. Zhbannikov, I. V. Akushevich, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see: (i) "Life tables
with covariates: Dynamic model for nonlinear analysis of longitudinal data"
by Akushevich, I. et al. (2005), Mathematical Population Studies 12(2), 51(80),
<DOI:10.1080/08898480590932296>; (ii) "Stochastic model for analysis of
longitudinal data on aging and mortality" by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(iii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
License: GPL
Imports: Rcpp (>= 0.11.1)
LinkingTo: Rcpp,RcppArmadillo
Depends: mice, sas7bdat, stats, nloptr, survival, tools
Suggests: knitr (>= 1.11)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-24 02:01:27 UTC; ilya
Repository: CRAN
Date/Publication: 2016-05-24 05:39:03
providing 
.