Package: CNprep
Type: Package
Title: Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Version: 2.0
Date: 2012-12-06
Author: Alex Krasnitz, Guoli Sun
Maintainer: Guoli Sun <guolisun87@gmail.com>
Description: This package evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.
License: GPL-2
Depends: R (>= 2.10), parallel, mclust, rlecuyer
Packaged: 2014-12-31 17:11:09 UTC; gsun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-31 18:26:36
Package: snowFT
Title: Fault Tolerant Simple Network of Workstations
Version: 1.4-0
Author: Hana Sevcikova, A. J. Rossini
Description: Extension of the snow package supporting fault tolerant and reproducible applications, as well as supporting easy-to-use parallel programming - only one function is needed.
Maintainer: Hana Sevcikova <hanas@uw.edu>
License: GPL (>= 2)
Depends: R (>= 2.11), snow (>= 0.3-3), rlecuyer
Suggests: Rmpi
URL: http://www.stat.washington.edu/hana/parallel/snowFT-doc.pdf
Packaged: 2015-06-24 23:28:52 UTC; hana
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-06-25 07:20:05
Package: pbdMPI
Version: 0.3-1
Date: 2015-12-30
Title: Programming with Big Data -- Interface to MPI
Authors@R: c(person("Wei-Chen", "Chen", role = c("aut", "cre"), email =
"wccsnow@gmail.com"),
person("George", "Ostrouchov", role = "aut"),
person("Drew", "Schmidt", role = "aut"),
person("Pragneshkumar", "Patel", role = "aut"),
person("Hao", "Yu", role = "aut"),
person("Christian", "Heckendorf", role = "ctb", comment = "FreeBSD"),
person("Brian", "Ripley", role = "ctb", comment = "Windows HPC Pack
2012"),
person("R Core team", role = "ctb", comment = "some functions are
modified from the base packages"))
Depends: R (>= 3.0.0), methods, rlecuyer
Enhances: pbdPROF, pbdZMQ
LazyLoad: yes
LazyData: yes
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data ('SPMD')
parallel programming style, which is intended for batch parallel
execution.
SystemRequirements: OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012 R2 MS-MPI
Redistributable Package) on Windows.
License: Mozilla Public License 2.0
URL: http://r-pbd.org/
BugReports: http://group.r-pbd.org/
MailingList: Please send questions and comments regarding pbdR to
RBigData@gmail.com
NeedsCompilation: yes
Packaged: 2016-01-21 02:14:12 UTC; snoweye
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-21 08:26:43
Package: sprint
Title: Simple Parallel R INTerface
Version: 1.0.7
Date: 2014-09-24
Author: University of Edinburgh SPRINT Team <sprint@ed.ac.uk>
Copyright: University of Edinburgh
Maintainer: Eilidh Troup <e.troup@epcc.ed.ac.uk>
Contact: University of Edinburgh SPRINT Team <sprint@ed.ac.uk>
Depends: R (>= 2.9.2), rlecuyer, ff (>= 2.1-1), randomForest
Suggests: cluster, stringdist, RUnit, Matrix, SparseM, multtest, Biostrings, ShortRead, golubEsets, RankProd
Imports: boot, e1071
SystemRequirements: MPI(>= 2.0)
Description: SPRINT (Simple Parallel R INTerface) is a parallel
framework for R. It provides a High Performance Computing (HPC)
harness which allows R scripts to run on HPC clusters. SPRINT
contains a library of selected R functions that have been
parallelized. Functions are named after the original R function
with the added prefix 'p', i.e. the parallel version of cor()
in SPRINT is called pcor(). Call to the parallel R functions
are included directly in standard R scripts.
SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam),
apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest),
rank product (pRP) and hamming distance (pstringdistmatrix).
License: GPL (>= 3)
URL: http://www.r-sprint.org
Repository: CRAN
Packaged: 2014-09-29 12:12:34 UTC; eilidhtroup
Date/Publication: 2014-09-29 18:03:02
NeedsCompilation: yes
OS_type: unix
providing 
.