Last data update: 2014.03.03

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Results 1 - 10 of 22 found.
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megaptera : MEGAPhylogeny Techniques in R

Package: megaptera
Type: Package
Title: MEGAPhylogeny Techniques in R
Version: 1.0-0
Date: 2014-10-30
Author: Christoph Heibl
Maintainer: Christoph Heibl <christoph.heibl@gmx.net>
Depends: R (>= 2.10), snowfall, ips
Imports: ape, seqinr, methods, RPostgreSQL, XML
Suggests: knitr
Description: Given a set of taxa and marker, the goal is build a complete and correct sequence alignment for phylogenetic analysis.
License: GPL (>= 2)
VignetteBuilder: knitr
Packaged: 2014-11-13 06:55:15 UTC; stoffi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 08:44:56

● Data Source: CranContrib
● 0 images, 30 functions, 2 datasets
● Reverse Depends: 0

mglmn : Model Averaging for Multivariate GLM with Null Models

Package: mglmn
Type: Package
Title: Model Averaging for Multivariate GLM with Null Models
Version: 0.0.2
Date: 2015-05-11
Author: Masatoshi Katabuchi and Akihiro Nakamura
Maintainer: Masatoshi Katabuchi <mattocci27@gmail.com>
Depends: R (>= 2.10), mvabund, snowfall
Description: Tools for univariate and multivariate generalized linear models with model averaging and null model technique.
License: GPL-2
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-05-11 15:33:27 UTC; mattocci27
Date/Publication: 2015-05-11 18:42:41

● Data Source: CranContrib
● 0 images, 7 functions, 1 datasets
● Reverse Depends: 0

lle : Locally linear embedding

Package: lle
Type: Package
Title: Locally linear embedding
Version: 1.1
Date: 2012-03-21
Author: Holger Diedrich, Dr. Markus Abel (Department of Physics,
University Potsdam)
Maintainer: Holger Diedrich <holgerdiedrich@gmx.net>
Depends: scatterplot3d, MASS, snowfall
Suggests: rgl
Description: LLE is a non-linear algorithm for mapping high-dimensional
data into a lower dimensional (intrinsic) space. This package
provides the main functions to performs the LLE alogrithm
including some enhancements like subset selection, calculation
of the intrinsic dimension etc.
License: GPL-3
LazyLoad: yes
Packaged: 2012-03-21 09:51:04 UTC; holger
Repository: CRAN
Date/Publication: 2012-03-21 12:52:58

● Data Source: CranContrib
● 0 images, 14 functions, 0 datasets
● Reverse Depends: 0

mlDNA : Machine Learning-based Differential Network Analysis of Transcriptome Data

Package: mlDNA
Type: Package
Title: Machine Learning-based Differential Network Analysis of
Transcriptome Data
Version: 1.1
Date: 2013-11-18
Author: Chuang Ma and Xiangfeng Wang
Maintainer: Chuang Ma <chuangma2006@gmail.com>
Depends: R (>= 2.15.1), snowfall (>= 1.84-4), igraph (>= 0.6.6), rsgcc
(>= 1.0.6), e1071 (>= 1.6-1), randomForest (>= 4.6-7)
Imports: pROC (>= 1.5.4), ROCR (>= 1.0-5)
Suggests: bigmemory, GeneSelector, gplots, nnet, cairoDevice, fBasics
Description: Functions necessary to perform the machine learning-based
differential network analysis of transcriptome data.
URL: http://www.cmbb.arizona.edu/mlDNA
LazyLoad: yes
License: GPL (>= 2)
Packaged: 2013-11-18 17:33:55 UTC; wanglab
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-11-19 07:37:01

● Data Source: CranContrib
● 0 images, 19 functions, 0 datasets
● Reverse Depends: 0

kcirt : k-Cube Thurstonian IRT Models

Package: kcirt
Type: Package
Title: k-Cube Thurstonian IRT Models
Version: 0.6.0
Date: 2013-11-27
Author: Dave Zes, Jimmy Lewis, Dana Landis @ Korn/Ferry International
Maintainer: Dave Zes <zesdave@gmail.com>
Description: Create, Simulate, Fit, Solve k-Cube Thurstonian IRT Models
Depends: R (>= 3.0.0), mvtnorm, snowfall, corpcor
License: GPL (>= 2)
Packaged: 2014-04-22 15:24:20 UTC; dzes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 18:46:05

● Data Source: CranContrib
● 0 images, 14 functions, 0 datasets
● Reverse Depends: 0

DLMtool : Data-Limited Methods Toolkit

Package: DLMtool
Type: Package
Title: Data-Limited Methods Toolkit
Version: 3.2
Date: 2016-06-08
Author: Tom Carruthers and Adrian Hordyk
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Description: Simulation testing and implementation of data-limited fishery stock
assessment methods.
License: GPL-2
Depends: R (>= 2.10.0), methods, snowfall, boot, MASS, parallel
LazyData: yes
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2016-06-08 11:20:15 UTC; Adrian
Imports: Rcpp, abind, readxl
LinkingTo: Rcpp
Repository: CRAN
Date/Publication: 2016-06-09 05:49:14

● Data Source: CranContrib
3 images, 154 functions, 4 datasets
● Reverse Depends: 0

MicSim : Performing Continuous-Time Microsimulation

Package: MicSim
Type: Package
Title: Performing Continuous-Time Microsimulation
Version: 1.0.12
Date: 2016-06-06
Author: Sabine Zinn
Maintainer: Sabine Zinn <sabine.zinn@lifbi.de>
Description: This entry-level toolkit allows performing continuous-time microsimulation for a wide range of demographic applications. Individual life-courses are specified by a continuous-time multi-state model.
LazyData: yes
Depends: R (>= 3.0.1), chron, snowfall, rlecuyer
License: GPL-2
NeedsCompilation: no
Packaged: 2016-06-09 20:28:53 UTC; Biene
Repository: CRAN
Date/Publication: 2016-06-10 07:48:22

● Data Source: CranContrib
● Cran Task View: OfficialStatistics, Survival
● 0 images, 7 functions, 0 datasets
● Reverse Depends: 0

PIGE : Self contained gene set analysis for gene- and pathway-environment interaction analysis

Package: PIGE
Type: Package
Title: Self contained gene set analysis for gene- and
pathway-environment interaction analysis
Version: 0.9
Date: 2013-12-30
Author: Benoit Liquet, Therese Truong
Maintainer: Benoit Liquet <benoit.liquet@isped.u-bordeaux2.fr>
Depends: snowfall, ARTP, xtable, survival
Description: Extension of the ARTP package for gene- and pathway-environment
interaction
License: GPL (>= 2.0)
Collate: 'ARTP-GE.R' 'data.to.PIGE.R' 'permutation.snp.R'
'PIGE-package.R' 'compute.p.snp.obs.R' 'LR.inter.cat.R'
'LR.inter.cont.R' 'permutation.wrapper.cont.R' 'LR.cont.R'
'permutation.wrapper.cat.inter.R'
'permutation.wrapper.cont.inter.R'
'permutation.wrapper.cat.inter.Y.and.X.R'
'permutation.wrapper.cont.inter.Y.and.X.R'
'permutation.wrapper.cont.Y.and.X.R' 'LR.cont.surv.R'
'LR.inter.cat.surv.R' 'LR.inter.cont.surv.R'
'data.to.list.gene.snp.R'
Packaged: 2013-12-30 05:47:20 UTC; liquet
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-30 07:44:39

● Data Source: CranContrib
● 0 images, 18 functions, 7 datasets
● Reverse Depends: 0

NUCOMBog : NUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate

Package: NUCOMBog
Title: NUtrient Cycling and COMpetition Model Undisturbed Open Bog
Ecosystems in a Temperate to Sub-Boreal Climate
Version: 1.0.2
Authors@R: c(person("J.W.M.", "Pullens", email = "jeroenpullens@gmail.com", role =
c("aut", "cre")),
person("R.", "Silveyra Gonzalez",role="aut"),
person("M.","Bagnara",role ="aut"),
person("F.","Hartig",role="aut"))
Date: 2016-05-19
Description: Modelling the vegetation, carbon, nitrogen and water dynamics of undisturbed open bog ecosystems in a temperate to sub-boreal climate. The test data can be downloaded from http://jeroenpullens.github.io/NUCOMBog_data/. And the executable of the model can downloaded from https://github.com/jeroenpullens/source_modelMEE.
Depends: R (>= 3.0.0), snowfall
License: GPL
Maintainer: J.W.M. Pullens <jeroenpullens@gmail.com>
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-19 15:58:57 UTC; jeroen
Author: J.W.M. Pullens [aut, cre],
R. Silveyra Gonzalez [aut],
M. Bagnara [aut],
F. Hartig [aut]
Repository: CRAN
Date/Publication: 2016-05-19 19:55:53

● Data Source: CranContrib
● 0 images, 5 functions, 0 datasets
● Reverse Depends: 0

R2GUESS : Wrapper Functions for GUESS

Package: R2GUESS
Version: 1.7
Date: 2016-01-26
Title: Wrapper Functions for GUESS
Authors@R: c(person("Gianluca", "Campanella",
role=c("cre"), email="gianluca@campanella.org"),
person("Benoit", "Liquet",
role="aut", email="b.liquet@uq.edu.au"),
person("Marc", "Chadeau-Hyam",
role="aut", email="m.chadeau@imperial.ac.uk"),
person("Leonardo", "Bottolo",
role="ctb", email="l.bottolo@imperial.ac.uk"),
person("Sylvia", "Richardson",
role="ctb", email="sylvia.richardson@mrc-bsu.cam.ac.uk"))
Depends: R (>= 3.0.0), fields, MCMCpack, methods, mixOmics, mvtnorm,
snowfall
Description: Wrapper functions for GUESS, a GPU-enabled sparse Bayesian variable
selection method for linear regression based analysis of possibly
multivariate/correlated outcomes.
License: GPL (>= 2)
SystemRequirements: GNU Scientific Library (>= 1.12)
NeedsCompilation: yes
Packaged: 2016-01-26 13:14:38 UTC; gc
Author: Gianluca Campanella [cre],
Benoit Liquet [aut],
Marc Chadeau-Hyam [aut],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Repository: CRAN
Date/Publication: 2016-01-26 15:19:28

● Data Source: CranContrib
14 images, 27 functions, 3 datasets
● Reverse Depends: 0