EGSEA : Ensemble of Gene Set Enrichment Analyses

Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.0.3
Date: 10-05-2016
Author: Monther Alhamdoosh, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Description: This package implements the Ensemble of Gene Set Enrichment
Analyses (EGSEA) method for gene set testing.
biocViews: DifferentialExpression, GO, GeneExpression,
GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
OneChannel, Pathways, RNASeq, Sequencing, Software,
SystemsBiology, TwoChannel,Metabolomics, Proteomics, KEGG,
GraphAndNetwork
Depends: R (>= 3.3), Biobase, gage (>= 2.14.4), AnnotationDbi, topGO
(>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0), globaltest (>= 5.18.0),
limma (>= 3.20.9), edgeR (>= 3.6.8), HTMLUtils (>= 0.1.5),
hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0),
safe (>= 3.4.0), stringi (>= 0.5.0), parallel, stats,
grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, EGSEAdata
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Packaged: 2016-05-16 06:17:00 UTC; biocbuild