This is the data from Hall et al. The Organelle Proteome of the DT40 Lymphocyte Cell Line Mol Cell Proteomics. 2009 Jun;8(6):1295-305. (PMID: PMC2690488).
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hall2009
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Data from Havugimana et al. 2012, A census of human soluble protein complexes. The protein complexes were fractionated by ion exchange chromatography, Isoelectric focusing and sucrose density gradient centrifugation. Proteins were quantified by spectral counting.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: havugimana2012
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This is a spatial proteomics dataset from a hyperLOPIT experimental design on Mouse E14TG2a embryonic stem cells
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hyperLOPIT2015, hyperLOPIT2015ms2, hyperLOPIT2015ms3r1, hyperLOPIT2015ms3r2, hyperLOPIT2015ms3r3
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Data from Kirkwood et al. 2013, Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Protein complexes were separated by size exclusion chromatography and proteins were quantified by spectral counting.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: kirkwood2013
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Triplicated experimental data from Kristensen et al. 2012, A high-throughput approach for measuring temporal changes in the interactome. Protein complexes were separated by size exclusion chromatography and protein were quantified using SILAC.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: kristensen2012, kristensen2012r1, kristensen2012r2, kristensen2012r3
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This is the data from Mulvey et al., Dynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells. , Stem Cell. (PMID 26059426). See below for more details.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: mulvey2015, mulvey2015norm
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This is the data used in Nikolovksi et al. (2012). See below for details and references.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: nikolovski2012, nikolovski2012imp
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This is the data used in Nikolovksi et al. (2014). See below for details and references.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: nikolovski2014
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This is the data from Tan et al., Mapping organelle proteins and protein complexes in Drosophila melanogaster, J Proteome Res. 2009 Jun;8(6):2667-78. See below for more details.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: tan2009, tan2009r1, tan2009r1goCC, tan2009r2, tan2009r3
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The two Arabidobsis LOPIT data sets trotter2010shallow and trotter2010steep have been used in Trotter et al. (2010) to illustrate improvement of sub-cellular resolution upon data fusion. The data have originally been published in Dunkley et al. (2006) and Sadowski et al. (2008), respectively.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: trotter20010, trotter2010shallow, trotter2010steep
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