RforProteomics

Package: RforProteomics
Type: Package
Title: Companion package to the 'Using R and Bioconductor for
proteomics data analysis' publication
Version: 1.10.2
Authors@R: c(person("Laurent", "Gatto", role=c("aut", "cre"),
email="lg390@cam.ac.uk"),
person("Sebastian", "Gibb", role="ctb",
email="mail@sebastiangibb.de"),
person("Vlad", "Petyuk", role="ctb",
email="petyuk@gmail.com"),
person('Thomas', 'Pedersen Lin', role='ctb',
email='thomasp85@gmail.com'))
Maintainer: Laurent Gatto <lg390@cam.ac.uk>
Depends: MSnbase
Imports: R.utils, Biobase, rpx, biocViews, BiocInstaller,
interactiveDisplay, shiny
Suggests: knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, isobar,
MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData,
rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR,
BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer,
ggplot2, reshape2, xtable, lattice, mzID, pRoloc, pRolocdata,
MSGFplus, MSGFgui, MSnID, msmsTests, msmsEDA, corrplot,
Heatplus, gplots, VennDiagram
Enhances: cleaver
Description: This package contains code to illustrate the 'Using R and
Bioconductor for proteomics data analysis' paper. Two
vignettes describe the code and data needed to reproduce
the examples and figures described in the paper and
functionality for proteomics visualisation.
URL: http://lgatto.github.com/RforProteomics/
biocViews: ExperimentData, MassSpectrometryData, ReproducibleResearch
License: Artistic-2.0
VignetteBuilder: knitr
Author: Laurent Gatto [aut, cre], Thomas Lin Pedersen [ctb],
Sebastian Gibb [ctb], Vlad Petyuk [ctb]
NeedsCompilation: no
Packaged: 2016-05-28 15:19:44 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RforProteomics' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RforProteomics'
    finding HTML links ... done
    RProtVis                                html  
    RforProteomics                          html  
    downloadData                            html  
    getPXD000001mzData                      html  
    getPXD000001mzTab                       html  
    getPXD000001mzXML                       html  
    getPackagesInBiocView                   html  
    getThermoHelaPRTC                       html  
    id                                      html  
    packageDF                               html  
    proteomicsPackages                      html  
    qnt                                     html  
    finding level-2 HTML links ... done

    shinyMA                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RforProteomics)
Making 'packages.html' ... done