lumiMouseAllPMID
(Package: lumiMouseAll.db) :
Maps between Manufacturer Identifiers and PubMed Identifiers
lumiMouseAllPMID is an R object that provides mappings between manufacturer identifiers and PubMed identifiers. lumiMouseAllPMID2PROBE is an R object that provides mappings between PubMed identifiers and manufacturer identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllPMID, lumiMouseAllPMID2PROBE
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lumiMouseAllPROSITE is an R object that provides mappings between a manufacturer identifier and the associated PROSITE identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllPROSITE
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lumiMouseAllREFSEQ
(Package: lumiMouseAll.db) :
Map between Manufacturer Identifiers and RefSeq Identifiers
lumiMouseAllREFSEQ is an R object that provides mappings between manufacturer identifiers and RefSeq identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllREFSEQ
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lumiMouseAllSYMBOL
(Package: lumiMouseAll.db) :
Map between Manufacturer Identifiers and Gene Symbols
lumiMouseAllSYMBOL is an R object that provides mappings between manufacturer identifiers and gene abbreviations.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllSYMBOL
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lumiMouseAllUNIGENE
(Package: lumiMouseAll.db) :
Map between Manufacturer Identifiers and UniGene cluster identifiers
lumiMouseAllUNIGENE is an R object that provides mappings between manufacturer identifiers and UniGene identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllUNIGENE
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lumiMouseAllUNIPROT
(Package: lumiMouseAll.db) :
Map Uniprot accession numbers with Entrez Gene identifiers
lumiMouseAllUNIPROT is an R object that contains mappings between the manufacturer identifiers and Uniprot accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllUNIPROT, lumiMouseAllUNIPROT2PROBE
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Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiMouseAll_dbInfo, lumiMouseAll_dbconn, lumiMouseAll_dbfile, lumiMouseAll_dbschema
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lumiMouseIDMapping
(Package: lumiMouseIDMapping) :
Illumina ID Mapping information of all Mouse expression chips
Welcome to the lumiMouseIDMapping ID mapping Package. The purpose of this package is to provide ID mappings between different types of Illumina identifiers of Mouse Expression chips and nuIDs, and also mappings from nuIDs to the the most recent Mus musculus RefSeq release and Entez_Gene_ID. The library includes the data tables corresponding to all released Illumian Mouse Expression chips before the package releasing date. Each table includes columns "Search_key" ("Search_Key"), "Target" ("ILMN_Gene"), "Accession", "Symbol", "ProbeId" ("Probe_Id") and "nuID". It also includes a nuID_MappingInfo table, which keeps the mapping information of nuID to Accession ID, Entrez_Gene_ID and Symbol. For the version after 1.8.0, all mapping information was based on Illumina manifest files. Information from new versions of manifest files will replace the old ones with the same probe id. The package is supposed to be used together with the Bioconductor lumi package.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseIDMapping
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Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiMouseIDMapping_dbInfo, lumiMouseIDMapping_dbconn, lumiMouseIDMapping_dbfile
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lumiMouseIDMapping_nuID
(Package: lumiMouseIDMapping) :
Mapping nuIDs of Illumina Mouse chips to the most recent Mus musculus RefSeq release
We mapped nuIDs of Illumina Mouse chips by BLASTing each probe sequence (converted from nuID) against the the most recent Mus musculus RefSeq release. The mapping also includes the mapping quality information.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiMouseIDMapping_nuID
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