|
estimate the cpsites for a giving chromosome
● Data Source:
BioConductor
● Keywords: misc
● Alias: CPsite_estimation
●
0 images
|
|
predict the alternative cleavage and polyadenylation (CP or APA) site.
● Data Source:
BioConductor
● Keywords: misc
● Alias: CPsites
●
0 images
|
|
predict and estimate the alternative polyadenylation and cleavage site for mRNA-seq data
● Data Source:
BioConductor
● Keywords: package
● Alias: InPAS, InPAS-package
●
0 images
|
|
calculate the CP score by PWM
● Data Source:
BioConductor
● Keywords: misc
● Alias: PAscore
●
0 images
|
|
calculate CP score by cleanUpdTSeq
● Data Source:
BioConductor
● Keywords: misc
● Alias: PAscore2
●
0 images
|
|
extract 3UTR coverage from totalCov according and GRanges object utr3.
● Data Source:
BioConductor
● Keywords: misc
● Alias: UTR3TotalCoverage
●
0 images
|
An object of class UTR3eSet represents the results of 3UTR usage
● Data Source:
BioConductor
● Keywords: classes
● Alias: $,UTR3eSet-method, $<-,UTR3eSet-method, UTR3eSet, UTR3eSet-class
●
0 images
|
|
calculate the usage of long and short form of UTR3 for the results of CPsites
● Data Source:
BioConductor
● Keywords: misc
● Alias: UTR3usage
●
0 images
|
|
calculate the cutoff threshold of coverage for long form and short form
● Data Source:
BioConductor
● Keywords: misc
● Alias: covThreshold
●
0 images
|
|
read coverage from bedGraph files and save as a list.
● Data Source:
BioConductor
● Keywords: misc
● Alias: coverageFromBedGraph
●
0 images
|
providing 
.