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Results 1 - 10 of 132 found.
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mice : Multivariate Imputation by Chained Equations

Package: mice
Type: Package
Version: 2.25
Title: Multivariate Imputation by Chained Equations
Date: 2015-11-09
Authors@R: c(person("Stef", "van Buuren", role = c("aut","cre"),
email = "stef.vanbuuren@tno.nl"),
person("Karin", "Groothuis-Oudshoorn", role = "aut",
email = "c.g.m.oudshoorn@utwente.nl"),
person("Alexander", "Robitzsch", role = "ctb",
email = "a.robitzsch@bifie.at"),
person("Gerko","Vink", role = "ctb",
email = "g.vink@uu.nl"),
person("Lisa","Doove", role = "ctb",
email = "lisa.doove@ppw.kuleuven.be"),
person("Shahab","Jolani", role = "ctb",
email = "s.jolani@uu.nl"))
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Depends: methods, R (>= 2.10.0), Rcpp (>= 0.10.6)
Imports: lattice, grDevices, graphics, MASS, nnet, rpart, splines,
stats, survival, utils
Suggests: AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig
LinkingTo: Rcpp
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm. Each variable has its own imputation
model. Built-in imputation models are provided for continuous data
(predictive mean matching, normal), binary data (logistic regression),
unordered categorical data (polytomous logistic regression) and ordered
categorical data (proportional odds). MICE can also impute continuous
two-level data (normal model, pan, second-level variables). Passive
imputation can be used to maintain consistency between variables. Various
diagnostic plots are available to inspect the quality of the imputations.
License: GPL-2 | GPL-3
LazyLoad: yes
LazyData: yes
URL: http://www.stefvanbuuren.nl
NeedsCompilation: yes
Packaged: 2015-11-09 14:33:15 UTC; buurensv
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb]
Repository: CRAN
Date/Publication: 2015-11-09 17:16:02

● Data Source: CranContrib
● Cran Task View: Multivariate, OfficialStatistics
● 0 images, 77 functions, 15 datasets
Reverse Depends: 12

gaston : Genetic Data Manipulation (Quality Control, GRM and LD Computations, PCA), Linear Mixed Models (AIREML Algorithm), Association Testing

Package: gaston
Type: Package
Title: Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Association Testing
Version: 1.4.5
Date: 2016-03-30
Encoding: UTF-8
Author: Hervé Perdry & Claire Dandine-Roulland
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalization trick).
License: GPL-3
LinkingTo: Rcpp,RcppParallel,RcppEigen
Depends: Rcpp, RcppParallel, methods, WhopGenome, LDheatmap
NeedsCompilation: yes
LazyLoad: yes
LazyData: yes
Packaged: 2016-03-30 14:20:54 UTC; rv
Repository: CRAN
Date/Publication: 2016-03-30 20:35:14

● Data Source: CranContrib
● 0 images, 23 functions, 3 datasets
● Reverse Depends: 0

lm.br : Linear Model with Breakpoint

Package: lm.br
Type: Package
Title: Linear Model with Breakpoint
Version: 2.8
Date: 2016-01-28
Authors@R: c( person("Marc", "Adams", role= c("aut", "cre"), email= "lm.br.pkg@gmail.com"),
person("authors of R function 'lm'", role = "ctb", comment = "general interface"),
person("authors of 'lm.gls'", role = "ctb", comment = "interface and R code for covariate weights"),
person("U.S. NIST", role = "ctb", comment = "C++ code for TNT::Vector template") )
Copyright: 'lm.br' uses the design and some R-code of 'lm' copyright
(C) 2015 The R Foundation for Statistical Computing, and of
'lm.gls' copyright (C) 1994-2005 W. N. Venables and B. D.
Ripley.
Description: Exact significance tests for a changepoint in linear or multiple linear regression.
Confidence regions with exact coverage probabilities for the changepoint.
License: GPL (>= 2)
Depends: R (>= 3.0.1), Rcpp (>= 0.11.0)
Imports: stats, methods, graphics, datasets
LinkingTo: Rcpp
Packaged: 2016-01-29 03:57:55 UTC; rforge
Author: Marc Adams [aut, cre],
authors of R function 'lm' [ctb] (general interface),
authors of 'lm.gls' [ctb] (interface and R code for covariate weights),
U.S. NIST [ctb] (C++ code for TNT::Vector template)
Maintainer: Marc Adams <lm.br.pkg@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: blmr
Repository/R-Forge/Revision: 56
Repository/R-Forge/DateTimeStamp: 2016-01-29 03:19:38
Date/Publication: 2016-01-29 22:42:36
NeedsCompilation: yes

● Data Source: CranContrib
● 0 images, 7 functions, 0 datasets
● Reverse Depends: 0

miscF : Miscellaneous Functions

Package: miscF
Title: Miscellaneous Functions
Version: 0.1-2
Author: Dai Feng
Description: Various functions for random number generation, density
estimation, classification, curve fitting, and spatial data
analysis.
Maintainer: Dai Feng <dai_feng@merck.com>
Depends: R (>= 2.15.0), MCMCpack (>= 1.2-4), mvtnorm (>= 0.9-9992), Rcpp
(>= 0.10.3), RcppArmadillo (>= 0.3.810.2)
Suggests: mixAK (>= 2.6)
LinkingTo: Rcpp, RcppArmadillo
License: GPL
Packaged: 2013-06-13 16:47:56 UTC; fengd
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-06-14 07:00:23

● Data Source: CranContrib
● 0 images, 8 functions, 0 datasets
Reverse Depends: 1

multicool : Permutations of Multisets in Cool-Lex Order

Package: multicool
Type: Package
Title: Permutations of Multisets in Cool-Lex Order
Version: 0.1-9
Date: 2015-10-28
Author: James Curran, Aaron Williams, Jerome Kelleher, Dave Barber
Maintainer: James Curran <j.curran@auckland.ac.nz>
Description: A set of tools to permute multisets without loops or hash tables and to generate integer partitions. The permutation functions are based on C code from Aaron Williams. Cool-lex order is similar to colexicographical order. The algorithm is described in Williams, A. Loopless Generation of Multiset Permutations by Prefix Shifts. SODA 2009, Symposium on Discrete Algorithms, New York, United States. The permutation code is distributed without restrictions. The code for stable and efficient computation of multinomial coefficients comes from Dave Barber. The code can be download from http://home.comcast.net/~tamivox/dave/multinomial/index.html and is distributed without conditions. The package also generates the integer partitions of a positive, non-zero integer n. The C++ code for this is based on Python code from Jerome Kelleher which can be found here http://jeromekelleher.net/partitions.php. The C++ code and Python code are distributed without conditions.
License: GPL-2
Depends: methods, Rcpp (>= 0.11.2)
LinkingTo: Rcpp
RcppModules: Multicool
NeedsCompilation: yes
Packaged: 2015-10-28 08:46:16 UTC; jcur002
Repository: CRAN
Date/Publication: 2015-10-28 18:39:18

● Data Source: CranContrib
● 0 images, 7 functions, 0 datasets
Reverse Depends: 3

mvcluster : Multi-View Clustering

Package: mvcluster
Type: Package
Title: Multi-View Clustering
Version: 1.0
Date: 2016-04-01
Author: Jiangwen Sun, Jin Lu, Tingyang Xu, Joseph Muller, Jinbo Bi
Maintainer: Jiangwen Sun <javon@engr.uconn.edu>
Description: Implementation of multi-view bi-clustering algorithms. When a sample is characterized by two or more sets of input features, it creates multiple data matrices for the same set of examples, each corresponding to a view. For instance, individuals who are diagnosed with a disorder can be described by their clinical symptoms (one view) and their genomic markers (another view). Rows of a data matrix correspond to examples and columns correspond to features. A multi-view bi-clustering algorithm groups examples (rows) consistently across the views and simultaneously identifies the subset of features (columns) in each view that are associated with the row groups. This mvcluster package includes three such methods. (1) MVSVDL1: multi-view bi-clustering based on singular value decomposition where the left singular vectors are used to identify row clusters and the right singular vectors are used to identify features (columns) for each row cluster. Each singular vector is regularized by the L1 vector norm. (2) MVLRRL0: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the so-called L0 vector norm (which is not really a vector norm). (3) MVLRRL1: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the L1 vector norm.
License: GPL (>= 3)
Depends: Rcpp (>= 0.12.0)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
URL: http://www.labhealthinfo.uconn.edu/multi-view-analytics/
Repository: CRAN
Date/Publication: 2016-04-03 16:31:05

● Data Source: CranContrib
● 0 images, 7 functions, 0 datasets
● Reverse Depends: 0

ngspatial : Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data

Package: ngspatial
Version: 1.0-5
Date: 1-16-2015
Title: Fitting the centered autologistic and sparse spatial generalized
linear mixed models for areal data
Type: Package
Author: John Hughes <hughesj@umn.edu> and Xiaohui Cui <cuixx132@umn.edu>
Maintainer: John Hughes <hughesj@umn.edu>
Depends: Rcpp, utils, batchmeans
Suggests: parallel
Description: ngspatial provides tools for analyzing spatial data, especially
non-Gaussian areal data. The current version supports the sparse spatial
generalized linear mixed model of Hughes and Haran (2013) and the centered
autologistic model of Caragea and Kaiser (2009).
License: GPL (>= 2)
LinkingTo: Rcpp, RcppArmadillo
URL: http://www.biostat.umn.edu/~johnh
Repository: CRAN
RcppModules: moller, perfsampler
Packaged: 2015-01-16 14:48:25 UTC; jphughesjr
NeedsCompilation: yes
Date/Publication: 2015-01-16 18:12:08

● Data Source: CranContrib
● Cran Task View: Spatial
● 0 images, 10 functions, 2 datasets
● Reverse Depends: 0

nonlinearTseries : Nonlinear Time Series Analysis

Package: nonlinearTseries
Type: Package
Title: Nonlinear Time Series Analysis
Version: 0.2.3
Date: 2015-07-17
Maintainer: Constantino A. Garcia <constantinoantonio.garcia@usc.es>
Authors@R: c(person("Constantino A.", "Garcia",
email = "constantinoantonio.garcia@usc.es",
role = c("aut", "cre")),
person("Gunther", "Sawitzki",
role = "ctb"))
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
License: GPL (>= 3)
Copyright: ANN library is copyright University of Maryland and Sunil
Arya and David Mount. R wrapper is based on the ANN library,
copyright Samuel Kemp 2005-9 and Gregory Jefferis 2009-2013.
See file COPYRIGHT for details
Depends: Matrix, rgl, tseries, TSA, Rcpp (>= 0.10.5), graphics, stats
LinkingTo: Rcpp
Suggests: plot3D, knitr,
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-07-25 11:31:31 UTC; gaussllego
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Repository: CRAN
Date/Publication: 2015-07-25 17:43:38

● Data Source: CranContrib
● Cran Task View: TimeSeries
● 0 images, 44 functions, 0 datasets
Reverse Depends: 1

matchingR : Matching Algorithms in R and C++

Package: matchingR
Type: Package
Title: Matching Algorithms in R and C++
Version: 1.2.1
Date: 2015-10-31
Author: Jan Tilly, Nick Janetos
Maintainer: Jan Tilly <jtilly@econ.upenn.edu>
Description: Computes matching algorithms quickly using Rcpp.
Implements the Gale-Shapley Algorithm to compute the stable
matching for two-sided markets, such as the stable marriage
problem and the college-admissions problem. Implements Irving's
Algorithm for the stable roommate problem. Implements the top
trading cycle algorithm for the indivisible goods trading problem.
License: GPL (>= 2)
URL: https://github.com/jtilly/matchingR/
BugReports: https://github.com/jtilly/matchingR/issues/
Depends: Rcpp
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, microbenchmark
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-11-01 03:36:27 UTC; jtilly
Repository: CRAN
Date/Publication: 2015-11-01 17:54:54

● Data Source: CranContrib
● 0 images, 24 functions, 0 datasets
● Reverse Depends: 0

kergp : Gaussian Process Laboratory

Package: kergp
Type: Package
Title: Gaussian Process Laboratory
Version: 0.2.0
Date: 2015-12-22
Author: Yves Deville, David Ginsbourger, Olivier Roustant. Contributors: Nicolas Durrande.
Maintainer: Yves Deville <deville.yves@alpestat.com>
Description: Gaussian Process models with customised covariance kernels.
License: GPL-3
Depends: Rcpp (>= 0.10.5), methods, testthat
Suggests: DiceKriging, DiceDesign, lhs, inline, foreach
Imports: MASS, numDeriv, stats4, doParallel
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2015-12-23 06:16:18 UTC; yves
Repository: CRAN
Date/Publication: 2015-12-23 09:15:28

● Data Source: CranContrib
● 0 images, 30 functions, 0 datasets
● Reverse Depends: 0