Package: gapmap
Type: Package
Title: Functions for Drawing Gapped Cluster Heatmap with ggplot2
Version: 0.0.4
URL: https://bitbucket.org/vda-lab/gapmap
Date: 2015-12-14
Author: Ryo Sakai
Maintainer: Ryo Sakai <ryo@vda-lab.be>
Description: The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.
License: GPL-2 | GPL-3
Depends: ggplot2, reshape2
Imports: grid
Suggests: knitr, dendsort, RColorBrewer
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-14 11:44:45 UTC; ryosakai
Repository: CRAN
Date/Publication: 2015-12-14 14:15:38
Package: mmppr
Version: 0.1
Date: 2016-01-06
Title: Markov Modulated Poisson Process for Unsupervised Event
Detection in Time Series of Counts
Author: Graham Mueller [aut, cre]
Maintainer: Peter Landwehr <peter.landwehr@giantoak.com>
Depends: R (>= 3.0.2), expm, reshape2, stats, methods
Description: Time-series of count data occur in many different contexts. A
Markov-modulated Poisson process provides a framework for detecting
anomalous events using an unsupervised learning approach.
License: GPL (>= 2)
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-11 09:44:41
Package: STMedianPolish
Type: Package
Title: Spatio-Temporal Median Polish
Version: 0.1
Date: 2015-06-21
Author: William Martinez, Carlos Melo <cmelo@udistrital.edu.co>
Maintainer: William Martinez <willimarti2008@gmail.com>
Depends: R (>= 2.15.0), maptools, reshape2, sp, spacetime, zoo
Description: Analysis by spatio-temporal data using the decomposition in n-dimensional arrays and using median polish technique.
License: GPL (>= 2)
LazyData: true
Encoding: latin1
NeedsCompilation: no
Packaged: 2015-06-21 17:51:19 UTC; willimarti2008
Repository: CRAN
Date/Publication: 2015-06-22 01:52:24
Package: JAGUAR
Type: Package
Title: Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Version: 3.0.0
Date: 2015-09-15
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya <c.acharya@duke.edu>
Depends: R (>= 3.0.0), Rcpp, plyr, lme4, reshape2
LinkingTo: RcppArmadillo, Rcpp, RcppProgress
NeedsCompilation: yes
Description: Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.
License: GPL-2
URL: https://groups.google.com/d/forum/jaguar-r-package
Packaged: 2015-09-23 16:27:07 UTC; ca31
Repository: CRAN
Date/Publication: 2015-09-24 11:47:57
Package: diverse
Title: Diversity Measures for Complex Systems
Version: 0.1.2
Author: Miguel R. Guevara <miguel.guevara@upla.cl>, Dominik Hartmann
<d.hartmann@uni-hohenheim.de>, Marcelo Mendoza
<marcelo.mendoza@usm.cl>
Maintainer: Miguel R. Guevara <miguel.guevara@upla.cl>
Description: Computes the most common diversity measures used in social and other sciences, and includes new measures from interdisciplinary research.
Depends: proxy, reshape2, foreign, stats
Suggests: pheatmap, igraph, entropart
URL: https://github.com/mguevara/diverse
Date: 2016-06-02
BugReports: https://github.com/mguevara/diverse/issues
License: CC BY-SA 4.0
Repository: CRAN
LazyData: true
NeedsCompilation: no
Packaged: 2016-06-03 13:11:06 UTC; mguevara
Date/Publication: 2016-06-03 18:51:08
Package: CINOEDV
Type: Package
Title: Co-Information based N-Order Epistasis Detector and Visualizer
Version: 2.0
Date: 2014-11-26
Author: Junliang Shang
Maintainer: Junliang Shang <shangjunliang110@163.com>
Description: Detecting and visualizing nonlinear interaction effects of single nucleotide polymorphisms or epistatic interactions, especially high-order epistatic interactions, are important topics in bioinformatics because of their significant mathematical and computational challenges. We present CINOEDV (Co-Information based N-Order Epistasis Detector and Visualizer) for detecting, visualizing, and analyzing high-order epistatic interactions by introducing virtual vertices into the construction of a hypergraph. CINOEDV was developed as an alternative to existing software to build a global picture of epistatic interactions and unexpected high-order epistatic interactions, which might provide useful clues for understanding the underlying genetic architecture of complex diseases.
License: GPL-2
LazyLoad: yes
Depends: R.matlab, igraph, ggplot2, reshape2
Packaged: 2014-11-27 07:22:48 UTC; root
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-27 09:45:12
providing 
.