Last data update: 2014.03.03

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Results 1 - 5 of 5 found.
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domainsignatures : Geneset enrichment based on InterPro domain signatures

Package: domainsignatures
Type: Package
Title: Geneset enrichment based on InterPro domain signatures
Version: 1.32.0
Author: Florian Hahne, Tim Beissbarth
Maintainer: Florian Hahne <florian.hahne@novartis.com>
Description: Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.
Depends: R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports: AnnotationDbi
License: Artistic-2.0
Collate: AllClasses.R methods-ipDataSource.R getKEGGdata.R sage.test.R
compSimilarities.R sim2Pathway.R getKEGGdescription.R
resampleGeneLists.R dataSource.R gseDomain.R
LazyLoad: yes
biocViews: Annotation, Pathways, GeneSetEnrichment
NeedsCompilation: no
Packaged: 2016-05-05 01:59:43 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation, GeneSetEnrichment, Pathways
● 0 images, 6 functions, 0 datasets
● Reverse Depends: 0

PGSEA : Parametric Gene Set Enrichment Analysis

Package: PGSEA
Type: Package
Title: Parametric Gene Set Enrichment Analysis
Version: 1.46.0
Date: 2012-03-22
Author: Kyle Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>
Maintainer: Karl Dykema <karl.dykema@vai.org>
Description: Parametric Analysis of Gene Set Enrichment
Depends: R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods,
Biobase (>= 2.5.5)
Suggests: GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
License: GPL-2
ZipData: no
biocViews: Microarray
LazyData: no
NeedsCompilation: no
Packaged: 2016-05-04 03:06:30 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Microarray
1 images, 11 functions, 5 datasets
Reverse Depends: 1

ExpressionView : Visualize biclusters identified in gene expression data

Package: ExpressionView
Version: 1.24.0
Date: Sep 23, 2012
Title: Visualize biclusters identified in gene expression data
Author: Andreas Luscher <andreas.luescher@a3.epfl.ch>
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Description: ExpressionView visualizes possibly overlapping biclusters
in a gene expression matrix. It can use the result of the ISA
method (eisa package) or the algorithms in the biclust
package or others. The viewer itself was developed using Adobe
Flex and runs in a flash-enabled web browser.
Depends: caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db,
AnnotationDbi
Imports: methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Suggests: ALL, hgu95av2.db, biclust, affy
biocViews: Classification, Visualization, Microarray, GeneExpression,
GO, KEGG
Collate: AllGenerics.R export.R launch.R order.R zzz.R
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-05-04 03:33:33 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Classification, GO, GeneExpression, KEGG, Microarray, Visualization
● 0 images, 4 functions, 0 datasets
● Reverse Depends: 0

Mulder2012 : Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Package: Mulder2012
Type: Package
Title: Predicting functional networks and modules of chromatin factors
controlling adult stem cell fate from RNA interference screens
Version: 0.12.0
Date: 2012-05-30
Author: Xin Wang <Xin.Wang@cancer.org.uk>, Florian Markowetz <Florian.Markowetz@cancer.org.uk>
Maintainer: Xin Wang <Xin.Wang@cancer.org.uk>
Depends: R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports: igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
Suggests: snow
Description: This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.
License: Artistic-2.0
biocViews: StemCell, CancerData
Collate: Mulder2012_fun.R Mulder2012.R Arora2010_fun.R Arora2010.R
LazyLoad: yes
Packaged: 2016-05-07 20:25:23 UTC; biocbuild
NeedsCompilation: no

● Data Source: BioConductor
● BiocViews: CancerData, StemCell
● 0 images, 21 functions, 0 datasets
● Reverse Depends: 0

annaffy : Annotation tools for Affymetrix biological metadata

Package: annaffy
Version: 1.44.0
Date: 2010-12-29
Title: Annotation tools for Affymetrix biological metadata
Author: Colin A. Smith <colin@colinsmith.org>
Maintainer: Colin A. Smith <colin@colinsmith.org>
Depends: R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports: AnnotationDbi (>= 0.1.15), DBI
Suggests: hgu95av2.db, multtest, tcltk
Description: Functions for handling data from Bioconductor Affymetrix
annotation data packages. Produces compact HTML and text
reports including experimental data and URL links to many
online databases. Allows searching biological metadata using
various criteria.
License: LGPL
LazyLoad: yes
biocViews: OneChannel, Microarray, Annotation, GO, Pathways,
ReportWriting
NeedsCompilation: no
Packaged: 2016-05-04 02:39:14 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting
● 0 images, 49 functions, 1 datasets
Reverse Depends: 4