Illustrative output of function accBic . It stores the accuracy of classification of each chromosome into the inverted population and the frequency of the inversion as a for a range of Bic thresholds.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ac
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Data set used to illustrate local haplotype coding performed with codeHaplo
● Data Source:
BioConductor
● Keywords: datasets
● Alias: gDat
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Illustrative data set, with local haplotypes encoded, to be used as input of scanInv .
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hapCode
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list of objects of class inversion , each of which contains the information of overlapping segments that cover candidate inversions within a chromosome.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: invList
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Sample set that illustrates the result of scanning a chromosome with segments of fix window size. It fits the inversion model for each segment and stores its results.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: scanRes
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MS2RAW data from direct infusion mass spectrometry.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: MS2RAW
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MS3RAW data from direct infusion mass spectrometry.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: MS3RAW
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ibspiked_set1 and ibspiked_set2 are objects of class iTRAQ4plexSpectra. It contains over 160 protein groups, over 1600 peptides from about 15,000 spectra each, mainly from background proteins and three spiked-in Ceruplasmins (CERU_HUMAN, CERU_MOUSE, CERU_RAT).
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ib_phospho, ibspiked_set1, ibspiked_set2, noise.model.hcd
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Peptides can appear in multiple proteins and therefore have different specificities.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: GROUPSPECIFIC, REPORTERSPECIFIC, group-specific, reporter-specific, specificities, unspecific
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testClass
(Package: iterativeBMA) :
Sample Test Data for the Iterative BMA Algorithm
This is an adapted leukemia (ALL, AML) dataset from Golub et al. (1999). This is a zero-one vector for 34 test samples. Class 0 represents an ALL sample, while class 1 represents an AML sample.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: testClass
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